Cottage Cheese Protein Pasta Bake

If you’ve ever stood in front of the fridge at 6:07 p.m. thinking, “I need something filling, easy, and please let it taste like comfort,” this Cottage Cheese Protein Pasta Bake is about to become your new weeknight bestie. It’s warm, cheesy, and secretly packed with protein—like a casserole wearing a cute little “I go to the gym” hat.

This is one of those recipes that feels like a hug (the kind where nobody asks you to “just hop on a quick call”). It’s simple enough for a busy Tuesday, but delicious enough that your family will think you’ve been plotting it all day.

Why You’ll Love This Cottage Cheese Protein Pasta Bake

  • Big comfort, low effort: It’s basically pasta + sauce + cheese magic, baked until bubbly.
  • Protein-packed without being “diet food”: Cottage cheese and Greek yogurt make it creamy and satisfying.
  • Perfect for picky eaters: Everything gets tucked under marinara and melted cheese like a delicious disguise.
  • Meal-prep hero: Leftovers reheat like a dream (and may even taste better the next day).

I’m all about recipes that feel doable—even when life is loud, the laundry is multiplying, and dinner needs to happen now. This one checks every box.

Ingredients You’ll Need

Here’s your grocery list (and yes, it’s all easy-to-find stuff):

  • 12 oz whole wheat penne pasta or Fusili
  • 1 lb lean ground beef (93% lean or higher)
    (This lean ratio keeps the protein high without turning your bake into a grease situation.)
  • 1 medium onion, diced
  • 3 cloves garlic, minced
  • 1 teaspoon Italian seasoning
  • 1 teaspoon salt + 1/2 teaspoon black pepper
  • 2 cups cottage cheese
    (Full-fat is my favorite for the smoothest texture and best flavor.)
  • 1 cup plain Greek yogurt
  • 2 cups marinara sauce
    (A quality sauce makes a bigger difference than we’d like to admit.)
  • 2 cups shredded mozzarella cheese
  • 1 cup grated Parmesan cheese
    (Fresh-grated melts beautifully—worth the extra 30 seconds.)
  • Fresh parsley for garnish

How to Make Cottage Cheese Protein Pasta Bake

Before you start: I highly recommend prepping everything first—onion diced, garlic minced, cheeses ready. This recipe moves fast once the stove is on, and nobody needs the stress of chasing a garlic clove across the cutting board.

Step 1: Cook the pasta (but don’t overdo it)

Bring a large pot of salted water to a boil and cook the whole wheat penne until al dente, about 1–2 minutes less than the package says.

Drain it really well (wet pasta can make the bake watery), and save 1/2 cup pasta water—just in case you want to loosen the mixture later.

Step 2: Brown the beef with onion and garlic

While the pasta cooks, heat a large skillet over medium-high heat. Add the ground beef, diced onion, and minced garlic.

Cook 8–10 minutes, until the beef is fully browned and reaches 165°F internally. Drain excess grease if needed, then season with:

  • Italian seasoning
  • salt
  • pepper

At this point your kitchen should smell like you’ve got your life together. (Even if you absolutely do not.)

Step 3: Mix the creamy protein base

In a mixing bowl, stir together:

  • 2 cups cottage cheese
  • 1 cup plain Greek yogurt

Mix until smooth and creamy. This is the “secret sauce” of the whole dish—protein-rich, tangy, and surprisingly luxurious once baked.

Step 4: Layer it up

Preheat your oven to 375°F.

In a large baking dish:

  1. Add the cooked pasta
  2. Add the beef mixture
  3. Pour in the marinara sauce

Gently mix so everything is evenly coated.

Optional: If it looks a little thick or dry, add a splash of that reserved pasta water.

Step 5: Add the cottage cheese mixture and all the cheese goodness

Dollop the cottage cheese + Greek yogurt mixture over the pasta and spread it out with a spatula.

Then top with:

  • shredded mozzarella
  • grated Parmesan

Don’t be shy—this is the part that makes it feel like comfort food, not “protein food.”

Step 6: Bake until bubbly and golden

Bake for 20–25 minutes, until the cheese is golden brown and bubbling around the edges.

Let it rest 5–10 minutes before serving. This helps it set up so you can slice it nicely (and also prevents molten cheese lava from burning your mouth… I speak from experience).

Finish with fresh chopped parsley for a pop of color and freshness.

My Favorite Tips (Because We All Like Easy Wins)

  • Full-fat cottage cheese = best texture. Low-fat can bake up a bit grainy. Still tasty, but not as creamy.
  • Don’t overcook the pasta. It keeps cooking in the oven, and mushy penne is… not the vibe.
  • Use a marinara you actually like. This is one of those recipes where the sauce flavor really shows.
  • If the cottage cheese looks “lumpy” at first, don’t panic. Once it bakes under sauce and cheese, it turns creamy and dreamy. (It’s like a glow-up, but for dairy.)

A Little Story From My Kitchen

This Cottage Cheese Protein Pasta Bake became a repeat in my house after one of those weeks where I needed dinner to pull its weight—comforting, filling, and something that wouldn’t leave everyone hungry an hour later.

The first time I made it, I told myself it was “just a quick bake.” Then I caught people going back for seconds like it was a holiday meal. That’s when I knew: this one wasn’t just dinner… it was a keeper.

Cottage Cheese Protein Pasta Bake in a glass casserole dish with rotini, rich meat marinara, melted mozzarella, and parsley on top.
Fresh from the oven, this Cottage Cheese Protein Pasta Bake is melty, hearty, and weeknight-easy with a golden cheese topping.

FAQs About Cottage Cheese Protein Pasta Bake

Can I swap the ground beef for something else?

Yes! Ground turkey or ground chicken works great. Just cook it fully and season well. (Lean meat loves seasoning like we love a good uninterrupted shower.)

Can I make this Cottage Cheese Protein Pasta Bake ahead of time?

Absolutely. Assemble everything, cover, and refrigerate up to 24 hours. When ready to bake, let it sit at room temp for 15–20 minutes if you can, then bake as directed (you may need a few extra minutes).

How do I store leftovers?

Store in an airtight container in the fridge for 3–4 days. Reheat in the microwave or oven until warmed through.

Can I freeze it?

Yes. Freeze portions in freezer-safe containers for up to 2–3 months. Thaw overnight in the fridge and reheat. The texture stays surprisingly good!

What if I don’t have whole wheat penne?

No problem. Regular penne, rotini, or ziti all work. Just keep that “al dente” rule so the bake doesn’t go soft.

Bring This Cottage Cheese Protein Pasta Bake to Your Table Tonight

If you need a dinner that’s cozy, filling, and doesn’t require a culinary degree (or a quiet house), this Cottage Cheese Protein Pasta Bake is the answer. It’s cheesy comfort with a protein boost, and it’s the kind of meal that makes everyone feel taken care of—even if your day was pure chaos.

When you make it, sprinkle that parsley, take a bite, and enjoy the moment. Because honestly? You deserve a dinner that feels like a win.

Keep the Dinner Magic Going

And hey—if you made this Cottage Cheese Protein Pasta Bake, I’d love to hear what you think! Leave a quick review and tap your star rating ⭐⭐⭐⭐⭐ (be honest—your stars help other home cooks choose dinner with confidence!).

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Cottage Cheese Protein Pasta Bake in a glass dish, topped with melted mozzarella, hearty meat sauce, and fresh parsley.

Cottage Cheese Protein Pasta Bake


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  • Author: Aneta
  • Total Time: 45 minutes
  • Yield: 6 servings 1x

Description

This Cottage Cheese Protein Pasta Bake is a cozy, cheesy weeknight dinner made with whole wheat pasta, lean ground beef, marinara, and a creamy cottage cheese + Greek yogurt layer. It bakes up bubbly and golden, tastes like comfort food, and packs in serious protein without feeling “diet.”


Ingredients

Scale
  • 12 oz whole wheat penne pasta or fusili

  • 1 lb lean ground beef (93% lean or higher)

  • 1 medium onion, diced

  • 3 cloves garlic, minced

  • 1 tsp Italian seasoning

  • 1 tsp salt

  • 1/2 tsp black pepper

  • 2 cups cottage cheese (full-fat preferred)

  • 1 cup plain Greek yogurt

  • 2 cups marinara sauce

  • 2 cups shredded mozzarella cheese

  • 1 cup grated Parmesan cheese

  • Fresh parsley, chopped (garnish)


Instructions

  1. Cook pasta: Bring a large pot of salted water to a boil. Cook pasta until al dente (about 1–2 minutes less than package directions). Drain well and reserve 1/2 cup pasta water.

  2. Cook beef mixture: In a large skillet over medium-high heat, brown ground beef with onion and garlic until beef reaches 165°F, about 8–10 minutes. Drain excess grease. Stir in Italian seasoning, salt, and pepper.

  3. Mix creamy layer: In a bowl, stir cottage cheese and Greek yogurt until smooth and creamy.

  4. Preheat + assemble: Preheat oven to 375°F. In a large baking dish, add pasta, beef mixture, and marinara. Mix gently. If needed, add a splash of reserved pasta water to loosen.

  5. Top: Spread the cottage cheese mixture evenly over the pasta. Sprinkle mozzarella and Parmesan over the top.

  6. Bake: Bake 20–25 minutes, until cheese is melted and golden and the edges are bubbling. Rest 5–10 minutes, then garnish with parsley and serve.

Notes

Best texture tip: Full-fat cottage cheese gives the creamiest result.

Don’t overcook pasta: It will soften more in the oven.

Sauce matters: Use a marinara you love—its flavor really shows.

Make-ahead: Assemble, cover, and refrigerate up to 24 hours. Add 5–10 minutes to baking time if going in cold.

Storage: Refrigerate leftovers 3–4 days. Freeze up to 2–3 months.

  • Prep Time: 15 minutes
  • Cook Time: 30 minutes
  • Category: Dinner
  • Method: Baking
  • Cuisine: American-italian

Nutrition

  • Serving Size: 1/6 of recipe
  • Calories: 520 kcal
  • Sugar: 8 g
  • Sodium: 880 mg
  • Fat: 20 g
  • Saturated Fat: 10 g
  • Unsaturated Fat: 8 g
  • Trans Fat: 0.5 g
  • Carbohydrates: 45 g
  • Fiber: 7 g
  • Protein: 42 g
  • Cholesterol: 95 mg

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